av SA Taylor · 2014 · Citerat av 67 — 2010) was then used with the taeGut1 refGene database to assign each The loci associated with oxidative phosphorylation and microRNA

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In bioinformatics, miRBase is a biological database that acts as an archive of microRNA sequences and annotations. As of September 2010 it contained information about 15,172 microRNAs. This number has risen to 38,589 by March 2018. The miRBase registry provides a centralised system for assigning new names to microRNA genes. (2009) High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera. BMC Genomics 10: 558 [NCBI] 119 > Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J. (2010) Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis. miRSel: documental database with associations between miRNAs and their targets using bibliographical searches.

Microrna database

Choose BLASTN to search for a miRNA homolog in a longer sequence. SSEARCH is useful for finding a short sequence within the library of miRNAs (for instance, find a short motif in a miRNA or precursor stem-loop, or find mature sequences that are related to your query). E-value cutoff: An intragenic microRNA database. Genes: Search by most common gene identifiers, see examples: Official symbol: LARP7; TP53 | Entrez gene: 51574; 7157 | Ensembl HMDD (the Human microRNA Disease Database) is a resource that curates experimentally supported miRNA and disease association data. HMDD was originally constructed on December 2007 and was updated more than 30 times during the past ten years. On June 2013, we released HMDD version 2 (HMDD v2.0). Welcome to the plant microRNA database (PMRD) homepage!

Abstract. The miRBase Sequence database is the primary repository for published microRNA (miRNA) sequence and annotation data. miRBase provides a user-friendly web interface for miRNA data, allowing the user to search using key words or sequences, trace links to the primary literature referencing the miRNA discoveries, analyze genomic coordinates and context, and mine relationships between 2011-02-25 · We have presented a unique database to aid researchers in determining the optimal microRNA prediction databases to use for application-specific microRNA:target searches.

MicroRNAs (miRNAs) play critical roles in diverse biological processes of plants, such as growth and development, stress response and metabolism (1). Currently, there are several databases accommodating information of plant miRNAs, such as miRBase (2), PMRD (3), miRNEST (4), miREX (5), PmiRKB (6) and PNRD (7).

Genes: Search by most common gene identifiers, see examples: Official symbol: LARP7; TP53 | Entrez gene: 51574; 7157 | Ensembl 2015-06-01 · Here we present the Dietary MicroRNA Databases (DMD), the first repository for archiving and analyzing the published and novel microRNAs discovered in dietary resources. Currently there are fifteen types of dietary species, such as apple, grape, cow milk, and cow fat, included in the database originating from 9 plant and 5 animal species. HMDD (the Human microRNA Disease Database) is a resource that curates experimentally supported miRNA and disease association data. HMDD was originally constructed on December 2007 and was updated more than 30 times during the past ten years.

eWRC-results.com - rally database. PDF) Significant changes in circulating microRNA by dietary Varsågod Originalet Mikael Walfridsson Pastor pic.

Materials: Buffy CoatcDNA / mRNADNAmicroRNAPBMCPeripheral blood cellsPlasmaRNAWhole Blood Sample collection types:Healthcare sample collection, Research sample collection. Juridical person:Västra Götalandsregionen I am Molecular Biologist by training and use bioinformatics methods for genome wide pan-metazoan miRNA complement analyses.

To date, the database has accumulated >13,404 validated MTIs from 11,021 articles from manual curations. 2020-06-15 Search method: BLASTN SSEARCH. Choose BLASTN to search for a miRNA homolog in a longer sequence. SSEARCH is useful for finding a short sequence within the library of miRNAs (for instance, find a short motif in a miRNA or precursor stem-loop, or find mature sequences that are … Welcome to the plant microRNA database (PMRD) homepage! MicroRNAs play an essential role in regulating plant growth and development and recently research in microRNAs has made great progress.
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The annotation covers the hairpin structure of the pre-microRNAs, cross-species sequence comparison on each mature microRNA, reported disease relevance, and the experimentally validated gene targets, of which a gene regulation network was built for each entry. Database of experimentally supported microRNA targets. TarBase v7.0 is the largest available manually curated target database, indexing more than 65,000 miRNA-gene interactions, 16.5-175-fold more than any other available implementation. PmiRKB (Plant microRNA Knowledge Base) includes the miRNAs of two model plants, Arabidopsis (A.

Authors: Cong Liu · Xiyin Wang at organism: Brassica oleracea. databases: miRNEST, miRBase, PMRD, microPC, Hao et al., Huang et al. (by default) MicroRNA expression profiling in endometrial adenocarcinoma. Sanja Jurcevic.
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We used the Human microRNA Disease Database (HMDD) to discover miRNAs which shared expression patterns in the related diseases of ischemia/reperfusion injury, coronary artery disease, stroke, and obesity as a model to identify miRNA candidates for biomarker and/or therapeutic intervention in complex human diseases.

Liknande sidor. microRNA. Webbplats om vetenskap. Clinical Trials sponsored by Novartis.